Peruvian Pelican (Pelecanus thagus) Walk Among the Rocks in the Ballestas Islands, near Ica, Peru. (Credit: Alexandre Laprise on Shutterstock)
In A Nutshell
- Between 1250 and 1400 CE, Peru’s Chincha Kingdom mastered seabird guano fertilization, enabling agriculture in one of Earth’s driest deserts centuries before the Inca Empire arrived
- Chemical analysis of centuries-old maize cobs reveals nitrogen signatures consistent with guano fertilization, providing the strongest evidence yet for this pre-Inca agricultural innovation
- When the Inca Empire arrived in the 1400s, they negotiated rather than conquered, possibly because controlling the guano supply could boost maize production across their territory
- Chincha’s strategic value persisted under Inca rule: colonial records report the Chincha lord received honors granted to no other provincial administrator
Between 1250 and 1400 CE, a kingdom in coastal Peru grew powerful enough that when the Inca Empire came calling, they didn’t conquer it through open warfare, they negotiated. The Chincha Kingdom controlled something the expanding empire likely valued highly: access to small islands blanketed in seabird droppings.
For at least two centuries before the Inca arrived, Chincha farmers had mastered using guano as fertilizer, transforming one of Earth’s driest deserts into farmland that fed over 100,000 people. This nitrogen-rich resource became so central to their economy that fisherfolk harvested it, farmers applied it to their maize fields, and merchants traded it up and down the coast. When imperial forces swept through the region in the 1400s, that agricultural expertise may have made Chincha more valuable as an ally than as a defeated rival.
Now, research published in PLOS One confirms what Spanish colonial records hinted at. Chemical analysis of centuries-old maize cobs shows distinctive signatures of guano fertilization dating back to at least 1250 CE. Scientists analyzed 35 maize specimens from tombs scattered across the valley and found evidence that this pre-Inca innovation shaped Chincha’s rise, and may have helped explain its unusual political leverage under Inca rule.
The Chemistry of Agricultural Innovation
Here’s how researchers cracked the case. Plants fertilized with seabird guano absorb nitrogen differently than unfertilized crops, leaving a chemical fingerprint that can persist for centuries in preserved plant remains. Lead author Jacob Bongers from the University of Sydney and his team tested centuries-old maize cobs from the Chincha Valley. In all, 22 of the 35 samples showed chemical signatures consistent with guano fertilization, with many of the most heavily fertilized samples associated with graves dated to the kingdom’s peak power period between 1250 and 1400 CE.
Colonial-era Spanish accounts back this up. They describe Indigenous farmers sailing to islands within 25 kilometers of shore on rafts, hauling back bird droppings by the boatload. Swiss naturalist Johann Jakob von Tschudi watched farmers add a fist-sized amount to each maize plant before flooding entire fields with water. Colonial sources claimed guano could revive exhausted soils and even double or triple yields.
Three Birds and an Economic Revolution
The real workforce behind Chincha’s rise? Guanay cormorants, Peruvian boobies, and Peruvian pelicans. These seabirds colonized offshore islands in massive numbers, and their droppings (mixed with feathers, food scraps, and carcasses) piled up year after year into deposits that became a critical pillar of the Chincha economy.
Chincha society organized around this resource. Fisherfolk harvested the guano. Farmers used it to grow maize in a landscape so arid it ranks among Earth’s driest places. Merchants traded it throughout the region. According to colonial-era sources, the Chincha lord commanded 100,000 rafts (the maritime infrastructure needed to keep this supply chain running).
The payoff was extraordinary. Archaeological surveys reveal a valley packed with settlements, administrative centers, irrigation systems, and over 500 graves clustered into dozens of cemeteries. At its height, the kingdom counted at least 30,000 tribute payers, likely representing a total population exceeding 100,000 people, all supported by agriculture in a desert.
Why the Inca Negotiated Instead of Conquering
When the Inca Empire swept through the coast in the 1400s, most kingdoms fell through military conquest. Not Chincha. Historical accounts describe a relatively peaceful incorporation that looked more like calculated negotiation than warfare. Bongers and colleagues suggest guano may have been a major factor: the Inca needed that fertilizer.
Maize wasn’t just food for the Inca, it was the key ingredient in fermented beer consumed at every important ceremony and state function. Controlling Chincha meant controlling the fertilizer that could boost maize production across the empire. The Inca built roads and administrative centers in the valley, which may have helped move guano throughout their territory.
Chincha’s strategic value persisted even after incorporation. In 1532, according to colonial accounts describing events at Cajamarca just before Francisco Pizarro’s catastrophic attack, the Chincha lord rode in a litter alongside Atahualpa, one of the empire’s final rulers: an honor reportedly granted to no other provincial administrator. The Inca had also formalized strict conservation laws: island access was restricted during bird breeding season, and according to colonial records, killing a guano bird carried the death penalty.
A Kingdom Built on Knowing Birds
Seabird imagery saturates Chincha material culture from the pre-Inca period: textiles, ceramics, decorated gourds, gold and silver work, adobe friezes, wall paintings, ceremonial wooden boards. Some depictions are naturalistic enough to identify specific species by their curved necks and long beaks. Others are more abstract but always associated with fish, waves, and agriculture.
One design shows maize sprouting from abstracted fish and terrace patterns, directly linking marine resources to crop fertility. This wasn’t just decoration, it was knowledge encoded in art, passed down through generations. Chincha specialists understood their birds. They knew these species were vulnerable to El Niño disruptions that could crash fish populations and trigger mass die-offs. That ecological knowledge, developed during the pre-Inca period, may have shaped conservation efforts later formalized under Inca rule.
Innovation That Outlasted Independence
Archaeological evidence suggests guano fertilization may have started even earlier on Peru’s north coast, with the Moche civilization during the first millennium CE. Multiple coastal kingdoms (Moche, Chimú, and Chincha) built their power in the same challenging environment: river valleys cutting through absolute desert, entirely dependent on runoff from distant mountains.
Irrigation helped, but it also created problems. Repeated watering in arid conditions concentrates salts in soil. Continuous planting depletes nutrients. Guano helped replenish what irrigation and intensive farming took away, allowing these valleys to support large populations for centuries.
By the 13th century, Chincha farmers were applying this fertilizer systematically, apparently preferring maize over other crops. That preference might reflect sophisticated knowledge: sulfur can be a limiting nutrient for maize, and guano delivers it in abundance.
What began as one kingdom’s agricultural innovation became so valuable it attracted an empire. The Inca didn’t just want Chincha’s territory or its people, they wanted the islands and the birds and the centuries of accumulated expertise about how to turn seabird waste into political power.
That pile of guano on rocky offshore islands that nobody else wanted? It powered a kingdom’s rise, ensured its survival when empires came calling, and continued to matter long after independence ended.
Paper Notes
Study Limitations
The study analyzed sulfur isotopes alongside nitrogen and carbon, but interpreting sulfur results proved challenging. Sulfur uptake depends on soil type, climate, watering practices, and timing of fertilization. Chincha Valley has sandy soils prone to sulfur depletion, made worse by the documented practice of flooding fields after adding guano. This may explain why sulfur signatures were less pronounced than expected. The study included 35 maize samples and 11 seabird specimens from a limited geographic area. Sample sizes from specific time periods were small, preventing detailed statistical comparisons between different eras. Radiocarbon date ranges sometimes spanned multiple cultural periods.
Funding and Disclosures
Jacob L. Bongers received funding from the National Science Foundation Graduate Research Fellowship Program (DGE-1144087), the Society of Fellows at Boston University, the Ford Foundation Fellowship Program, the National Geographic Young Explorers Grant Program (9347-13), and the Sigma Xi Grants-in-Aid Research Program. Funders had no role in study design, data collection, analysis, publication decisions, or manuscript preparation. Authors declared no competing interests.
Publication Details
Authors: Jacob L. Bongers (The University of Sydney; Australian Museum Research Institute), Emily B. P. Milton (Smithsonian Institution), Jo Osborn (Texas A&M University), Dorothée G. Drucker (University of Tübingen), Joshua R. Robinson (Boston University), Beth K. Scaffidi (University of California, Merced). | Journal: PLOS One | Title: “Seabirds shaped the expansion of pre-Inca society in Peru” | DOI: https://doi.org/10.1371/journal.pone.0341263 | Published: February 11, 2026 | Data Availability: All data are available within the paper and supporting files.







